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How to run Glide faster on a desktop

7/31/2012

We recently realized that using the "-LOCAL" flag in the /opt/schrodinger/glide command, the program will write to the current working directory resulting in a speed up of ~20%.

The command you should use is:

/opt/schrodinger/glide -LOCAL file.in

Evi

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Need quick access to a PDB on your phone? Try the RCSB PDB mobile app.

7/20/2012

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The new RCSB Protein Data Bank iPhone app provides fast, on-the-go access.

Search the entire PDB, view the latest weekly release of structures, access your MyPDB account, view structures in 3D, browse the entire catalog of Molecule of the Month articles.

Taken from the Structure-Based Drug Design Group of LinkedIn.

Zoe

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Bug in Ubuntu 11.10 after restart from updates: "Waiting for network configuration"

7/10/2012

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We recently updated one of our Desktops and when we restarted in, Ubuntu 11.10 seemed to load initially, but then we got a message "Waiting for network configuration" and 60 seconds later the screen turned black. We were able to login in the terminal, but the computer was unable to find a network.

This Ubuntu 11.10 bug and solution is described in:
http://uksysadmin.wordpress.com/2011/10/14/upgrade-to-ubuntu-11-10-problem-waiting-for-network-configuration-then-black-screen-solution/

Shortly the solution:

Hit Ctrl+Alt+F1 at the blank screen to get you to a non-X terminal (tty1)
Login in with your username and password
Change to root with: sudo -i and enter your password
mkdir -p /run /run/lock
rm -rf /var/run /var/lock
ln -s /run /var
ln -s /run/lock /var
reboot

You should have 11.10 back again.

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How to run Glide faster on a desktop

Need quick access to a PDB on your phone? Try the RCSB PDB mobile app.

Bug in Ubuntu 11.10 after restart from updates: "Waiting for network configuration"

Alexis, Isidora, Michalis, Danai, Panos, Celia, Klea, Zoe

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