Category: Visualization

Video: Supercomputer Modelling of a Complete Human Viral Pathogen

3/13/2013

In this video, researchers perform a reconstruction and simulation of the poliovirus using the BlueGene/Q supercomputer at the Victorian Life Sciences Computation Initiative. The poliovirus model is being used as a basis for understanding antiviral drugs, virus infection and helps us to learn how to model related viruses such as Enterovirus 71.

http://insidehpc.com/2013/03/06/video-supercomputer-modelling-of-a-complete-human-viral-pathogen/?goback=.gde_54503_member_220959831

Zoe

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Visualize an trajectory created by Impact (Schrodinger)

3/11/2013

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To visualize an impact trajectory, open the panel with the Impact parameters before starting the run and click on "Record Trajectory", which is deselected by default. The option is under: Applications -> Impact -> Dynamics -> MD Parameters -> Record Trajectory".
After your trajectory is ready, you will see a "T" in your project table. Click on the "T" and a trajcetory viewing panel will open.

To prepare a video file for incorporation into PowerPoint showing your modelling results you can use the following options:

You can create a movie in MPEG format of the selected entries in the Project Table with Entry → Record Movie.
From Suite 2010 on you can create a movie in MPEG format of a sequence of Workspace views, by clicking Record Movie in the Manage Views panel.
You can record a movie of a Desmond (or Impact) trajectory, in the Trajectory panel.
You can use the Maestro Viewer ActiveX control in a PowerPoint presentation, to show a structure in a Maestro window, and manipulate it (rotate, translate, zoom) in the presentation.

See also:

http://www.schrodinger.com/kb/354

Zoe

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Protein and molecule rendering in Matlab

11/7/2012

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In this link you can find details about rendering proteins or molecules with Matlab.
Evi

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Video: Supercomputer Modelling of a Complete Human Viral Pathogen

Visualize an trajectory created by Impact (Schrodinger)

Protein and molecule rendering in Matlab

Alexis, Michalis, Danai, Panos, Sotiris, Nastazia, Vassilis, Zoe

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