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Using Cloud Computing to Perform Molecular Dynamics Simulations of the Mutant PI3Kα Protein

10/14/2013

The lab participates in the UberCloud HPC Experiment Round 3 with the project: "TEAM 61 – Using Cloud Computing to Perform Molecular Dynamics Simulations of the Mutant PI3Kα Protein". Download the full report here.

The Ubercloud HPC Experiment aims to explore the end-to-end process of accessing remote resources in computer centers and in HPC Clouds, and to study and overcome the potential roadblocks. Read more about it from a previous blog entry.

Zoe

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./kamaki - a Tool for Managing Clouds from GRNET

4/25/2013

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./kamaki is a simple, yet intuitive, multipurpose, interactive command-line tool and client API for managing clouds.

As a develpment API is an initial implementation of the OpenStack Compute API, v1.1, with custom extensions specific to the Synnefo IaaS cloud management software.

./kamaki is open source and released under a 2-clause BSD License.

Zoe

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OCEANOS - The Greek Cloud Service

4/19/2013

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This is GRNET's cloud service, for the Greek Research and Academic Community. With ~okeanos you are one click away from your own Virtual Machines, Networks and Storage.

https://okeanos.grnet.gr/home/

Cyclades is the Virtual Compute and Network service of ~okeanos. With Cyclades you can build your own virtual machines, always connected to the Internet, manage them, destroy them, connect to them and take a handful of other actions, all from inside your favorite web browser.

Zoe

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The CompBio Experiment: How far are we from an ideal Computing-as-a-Service or HPC-in-the-Cloud model?

3/21/2013

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Cloud computing-on-demand gives end users many benefits by gaining access to additional compute resources beyond their current internal resources. But how far are we from an ideal Computing-as-a-Service or HPC-in-the-Cloud model?

To address this question, Wolfgang Gentzsch (HPC and Cloud Projects Specialist) and Burak Yenier (VP of Operations at CashEdge) organized the Uber-Cloud Experiment to explore the end-to-end process of accessing remote resources in computer centers and in HPC Clouds, and to study and overcome the potential roadblocks. Round 1 of the experiment kicked off in July 2012. Read the results here.

Over 250 participants have already registered for Round 2 and we are still seeking computational biologists and any others who would like to be involved. To participate in Round 2 or just monitor it closely—and to receive the final Round 1 report with all findings—register at http://www.compbioexperiment.com.

This is an open invitation to members of the Life Sciences community to join the experiment for a 3-month experiment, where they will apply the cloud computing service model to workloads on remote Cluster Computing resources in the areas of bio, pharma, and chemistry.

Our lab is a registered participant in this effort.

Zoe

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Using Cloud Computing to Perform Molecular Dynamics Simulations of the Mutant PI3Kα Protein

./kamaki - a Tool for Managing Clouds from GRNET

OCEANOS - The Greek Cloud Service

The CompBio Experiment: How far are we from an ideal Computing-as-a-Service or HPC-in-the-Cloud model?

Alexis, Michalis, Danai, Panos, Sotiris, Nastazia, Vassilis, Zoe

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