Making Docking/Scoring Calculations More Accurate via Error Analysis
Authored by: Kenneth M. Merz, Jr., Ph.D., Department of Chemistry, Quantum Theory Project, University of Florida
- Challenges facing computational biology
- Water models and water dimer
- 2010 GPCR docking and modeling competition
- What about the docking funnel?
Rational Approaches to Improving Selectivity in Drug Design
Authored by: Woody Sherman, Ph.D., Vice President, Applications Science, Shrodinger
- Factors contributing to selectivity
- Shape complementarity: Clash with decoy
- Remove decoy interactions
- Induced fit of target
- Experimental validation
Structure based Ligand Discovery for GPCRs
Authored by: Ruben Abagyan, Ph.D., Professor, Skaggs School of Pharmacy & Pharmaceutical Sciences, San Diego Supercomputer Center, University of California, San Diego
- Growing understanding of GPCR structure and function
- Docking to flexible sites: methods and benchmarks
- 2010 GPCR docking and modeling competition
- Ligand guided modeling of unsolved GPCRs and alternative states
Making Decisions in Fragment-Based Drug Discovery
Authored by: Rod Hubbard, Ph.D., Director, Structural Sciences, Vernalis Ltd.
- Overview of fragment-based methods
- Some (old) examples of successes
- Some fragmentology
- Hit rates and target druggability
- Predicting fragment poses
- Selectivity
- What are the opportunities for computational methods?
This is the agenda for the 2013 Structure-Based Drug Design Conference.
Zoe